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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Al Thomas | 11th | Félix Martínez | 6th | 11th |
| First Basemen | Derek Bangert | 7th | Derek Bangert | 3rd | 6th |
| Second Basemen | Raúl Ruíz | 5th | Steve Weber | 10th | 5th |
| Third Basemen | 9th | Yu-zeng Si | 6th | 9th | |
| Shortstops | Richard Jost | 1st | José Reyes | 10th | 1st |
| Left Fielders | 10th | Alberto Hernández | 2nd | 9th | |
| Center Fielders | José Valéncia | 5th | Jorge Díaz | 8th | 5th |
| Right Fielders | 11th | Bob Phillips | 11th | 11th | |
| Starting Pitchers | Ron Manning | 8th | Zafar Zahir | 7th | 6th |
| Relievers | Kyle Buckman | 9th | Tyler Lund | 12th | 12th |
| Closers | Joshua Long | 7th | Tyler Lund | 12th | 12th |
