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| Friday, December 29th, 2028 |
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| Drafted LF José Garza in the 2028 Rule 5 Draft (Round 1, Pick 21, 21st overall Pick), from the Plymouth Rocks. |
| Lost RP Jerry Beck in the Rule 5 Draft to the Philadelphia Athletics. |
| Drafted CF Jesús Raugel in the 2028 Rule 5 Draft (Round 2, Pick 21, 51st overall Pick), from the Nevada Noise. |
| Drafted SP Gustavo Ramos in the 2028 Rule 5 Draft (Round 3, Pick 21, 81st overall Pick), from the Plymouth Rocks. |
| Sunday, December 3rd, 2028 |
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| 3B Pablo Castillo received a 1-year contract through automatic renewal worth a total of $400,000. |
| 3B Gabriel Miranda received a 1-year contract through automatic renewal worth a total of $400,000. |
| RF Paco Arellano becomes a free-agent. |
| 2B Augusto Baiano received a 1-year contract through automatic renewal worth a total of $400,000. |
| CF Keith Beard becomes a free-agent. |
| LF Peter Hensley received a 1-year contract through automatic renewal worth a total of $400,000. |
| SP Samuel Émond becomes a free-agent. |
| C Mario Méndez received a 1-year contract through automatic renewal worth a total of $400,000. |
| RF Chance Santry received a 1-year contract through automatic renewal worth a total of $400,000. |
| RF Nick Scott received a 1-year contract through automatic renewal worth a total of $400,000. |
| Thursday, November 30th, 2028 |
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| C Robert Bly received a 1-year contract through arbitration worth a total of $800,000. |
| C Alberto Campos was not offered arbitration, becomes a free agent. |
| RP Butch Ramey received a 1-year contract through arbitration worth a total of $1,375,000. |
| SP Kip Manning received a 1-year contract through arbitration worth a total of $4,500,000. |
| 2B Jared Thompson received a 1-year contract through arbitration worth a total of $650,000. |
| RP Ron Biller received a 1-year contract through arbitration worth a total of $600,000. |
| SS Jesús Gutiérrez received a 1-year contract through arbitration worth a total of $600,000. |
| Thursday, November 16th, 2028 |
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| Signed manager Gabriel Ontiveros to a 3-year, $726,000 per year contract. |
| Signed pitching coach Keith Brennan to a 1-year, $60,000 per year contract. |
| Signed bench coach Gerald Booth to a 2-year, $100,000 per year contract. |
| Thursday, November 9th, 2028 |
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| RF Paco Arellano has exercised his contract opt-out. |
| MA Steve McCann retires. |
| PC Vernon Arnold retires. |
| Bench Coach Eduardo Ortíz leaves the team, his contract was not renewed. |
| Placed 3B Manolo Román on the active roster. |
| Activated 3B Manolo Román from the 60-day disabled list. |
