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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Brant Thigpen | 6th | Daryl Yandell | 4th | 7th |
| First Basemen | Obidiah Lewis | 3rd | Dan Vanblarcom | 1st | 3rd |
| Second Basemen | Tony Romero | 5th | Amon-Ra St. Brown | 4th | 5th |
| Third Basemen | Arturo Rodríguez | 3rd | Owen Kieffer | 7th | 4th |
| Shortstops | Nick Boyd | 7th | Júlio Rodríguez | 4th | 6th |
| Left Fielders | Roberto Maestas | 7th | 7th | 7th | |
| Center Fielders | Elmer Hudgins | 10th | Mike Lipide | 3rd | 10th |
| Right Fielders | Yao-pang Chiang | 1st | Josh Mawdesley | 4th | 1st |
| Starting Pitchers | Iván Vázquez | 9th | Kentaro Kato | 10th | 10th |
| Relievers | Roberto Silva | 1st | Ramón Cortéz | Tied for 8th | 1st |
| Closers | Roberto Silva | 1st | Jeremy Sears | 8th | 7th |
