| Saturday, December 29th, 2029 |
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| Purchased the contract of CF Ryan Holcomb from Triple A Redwood City. | | Promoted SP Cristo Balderas from Double A Menlo to Triple A Redwood City. | | Promoted 2B Miguel González from Double A Menlo to Triple A Redwood City. | | Demoted RP José Córdova from Triple A Redwood City to Double A Menlo. | | Promoted RP Jason Spencer from Single A Nashua to Double A Menlo. | | Promoted SP Mike Green from Rookie League Pueblo to Single A Nashua. | | Drafted 1B Willie Wallace in the 2029 Rule 5 Draft (Round 1, Pick 8, 8th overall Pick), from the Pocatello Bellas. | | Drafted DH Mark Wells in the 2029 Rule 5 Draft (Round 2, Pick 8, 38th overall Pick), from the Pocatello Bellas. | | Drafted SP Simon Martel in the 2029 Rule 5 Draft (Round 3, Pick 8, 68th overall Pick), from the Kalamazoo Royale with Cheese. |
| Wednesday, November 28th, 2029 |
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| CF Tim Ramsey received a 1-year contract through automatic renewal worth a total of $400,000. | | RP Henny van der Lack received a 1-year contract through automatic renewal worth a total of $400,000. | | RF José Peralta received a 1-year contract through automatic renewal worth a total of $400,000. | | C Juan Robles received a 1-year contract through automatic renewal worth a total of $400,000. | | RP Fernando Valdés received a 1-year contract through automatic renewal worth a total of $400,000. | | LF Keith Green received a 1-year contract through automatic renewal worth a total of $400,000. | | CL Pedro Cabrera received a 1-year contract through automatic renewal worth a total of $400,000. | | 2B Lonnie Anderson becomes a free-agent. | | SP Raúl Fernández received a 1-year contract through automatic renewal worth a total of $400,000. | | RP Domingo Franco received a 1-year contract through automatic renewal worth a total of $400,000. | | LF Javier Ortíz received a 1-year contract through automatic renewal worth a total of $400,000. | | 3B Enrico Rodríguez received a 1-year contract through automatic renewal worth a total of $400,000. | | RF Jackson Gibson received a 1-year contract through automatic renewal worth a total of $400,000. | | LF Eleuterio Supardo received a 1-year contract through automatic renewal worth a total of $400,000. | | SP Bill Peterson received a 1-year contract through automatic renewal worth a total of $400,000. | | 1B Bill McCraney received a 1-year contract through automatic renewal worth a total of $400,000. | | SP Nathan Seymour received a 1-year contract through automatic renewal worth a total of $400,000. | | 2B Robert Downing received a 1-year contract through automatic renewal worth a total of $400,000. | | RP Ed Lugo received a 1-year contract through automatic renewal worth a total of $400,000. | | 3B Héctor Vázquez received a 1-year contract through automatic renewal worth a total of $400,000. | | SS Bernardo Rodríguez received a 1-year contract through automatic renewal worth a total of $400,000. | | LF Pedro Rodríguez received a 1-year contract through automatic renewal worth a total of $400,000. | | 3B Gerald Miller received a 1-year contract through automatic renewal worth a total of $400,000. | | RF Bob Campbell received a 1-year contract through automatic renewal worth a total of $400,000. | | C David Adams received a 1-year contract through automatic renewal worth a total of $400,000. |
| Monday, November 26th, 2029 |
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| SP Thatcher Smith received a 1-year contract through arbitration worth a total of $2,200,000. | | 1B Ron Shelton was not offered arbitration, becomes a free agent. | | LF Jacob Pope received a 1-year contract through arbitration worth a total of $700,000. | | SP Tony Meyer received a 1-year contract through arbitration worth a total of $650,000. | | CF Mike Harris was not offered arbitration, becomes a free agent. | | SP Steven England received a 1-year contract through arbitration worth a total of $650,000. | | RP Steve Poe received a 1-year contract through arbitration worth a total of $650,000. | | RP James Jones received a 1-year contract through arbitration worth a total of $750,000. | | 3B Vic Langlois received a 1-year contract through arbitration worth a total of $8,125,000. | | 1B Steve Sampson received a 1-year contract through arbitration worth a total of $700,000. | | CL Sancho Mendoza received a 1-year contract through arbitration worth a total of $650,000. | | SP Leo Huggins received a 1-year contract through arbitration worth a total of $850,000. | | RF Marcos Pérez was not offered arbitration, becomes a free agent. | | RF Nicholas Alston was not offered arbitration, becomes a free agent. | | SP Ramiro Piña was not offered arbitration, becomes a free agent. |
| Saturday, November 17th, 2029 |
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| Signed manager Kevin Hickey to a 4-year, $722,000 per year contract. |
| Monday, November 5th, 2029 |
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| Manager Tamotsu Sasaki leaves the team, his contract was not renewed. |
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